Diffusion piecewise exponential models for survival extrapolation using Piecewise Deterministic Monte Carlo
By: Luke Hardcastle, Samuel Livingstone, Gianluca Baio
Potential Business Impact:
Predicts patient survival longer than seen.
The piecewise exponential model is a flexible non-parametric approach for time-to-event data, but extrapolation beyond final observation times typically relies on random walk priors and deterministic knot locations, resulting in unrealistic long-term hazards. We introduce the diffusion piecewise exponential model, a prior framework consisting of a discretised diffusion for the hazard, that can encode a wide variety of information about the long-term behaviour of the hazard, time changed by a Poisson process prior for knot locations. This allows the behaviour of the hazard in the observation period to be combined with prior information to inform extrapolations. Efficient posterior sampling is achieved using Piecewise Deterministic Markov Processes, whereby we extend existing approaches using sticky dynamics from sampling spike-and-slab distributions to more general transdimensional posteriors. We focus on applications in Health Technology Assessment, where the need to compute mean survival requires hazard functions to be extrapolated beyond the observation period, showcasing performance on datasets for Colon cancer and Leukaemia patients.
Similar Papers
Efficient computation of high-dimensional penalized piecewise constant hazard random effects models
Methodology
Finds genes that help cancer patients live longer.
Multi-state Models For Modeling Disease Histories Based On Longitudinal Data
Methodology
Helps doctors track disease changes better.
Bayesian Semi-Parametric Spatial Dispersed Count Model for Precipitation Analysis
Methodology
Finds hidden patterns in disease spread.