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Unraveling the Potential of Diffusion Models in Small Molecule Generation

Published: June 25, 2025 | arXiv ID: 2507.08005v1

By: Peining Zhang , Daniel Baker , Minghu Song and more

Potential Business Impact:

Helps invent new medicines faster.

Business Areas:
Bioinformatics Biotechnology, Data and Analytics, Science and Engineering

Generative AI presents chemists with novel ideas for drug design and facilitates the exploration of vast chemical spaces. Diffusion models (DMs), an emerging tool, have recently attracted great attention in drug R\&D. This paper comprehensively reviews the latest advancements and applications of DMs in molecular generation. It begins by introducing the theoretical principles of DMs. Subsequently, it categorizes various DM-based molecular generation methods according to their mathematical and chemical applications. The review further examines the performance of these models on benchmark datasets, with a particular focus on comparing the generation performance of existing 3D methods. Finally, it concludes by emphasizing current challenges and suggesting future research directions to fully exploit the potential of DMs in drug discovery.

Country of Origin
🇺🇸 United States

Page Count
13 pages

Category
Quantitative Biology:
Biomolecules