FigEx2: Visual-Conditioned Panel Detection and Captioning for Scientific Compound Figures

Scientific compound figures combine multiple labeled panels into a single image, but captions in real pipelines are often missing or only provide figure-level summaries, making panel-level understanding difficult. In this paper, we propose FigEx2, visual-conditioned framework that localizes panels and generates panel-wise captions directly from the compound figure. To mitigate the impact of diverse phrasing in open-ended captioning, we introduce a noise-aware gated fusion module that adaptively filters token-level features to stabilize the detection query space. Furthermore, we employ a staged optimization strategy combining supervised learning with reinforcement learning (RL), utilizing CLIP-based alignment and BERTScore-based semantic rewards to enforce strict multimodal consistency. To support high-quality supervision, we curate BioSci-Fig-Cap, a refined benchmark for panel-level grounding, alongside cross-disciplinary test suites in physics and chemistry. Experimental results demonstrate that FigEx2 achieves a superior 0.726 mAP@0.5:0.95 for detection and significantly outperforms Qwen3-VL-8B by 0.51 in METEOR and 0.24 in BERTScore. Notably, FigEx2 exhibits remarkable zero-shot transferability to out-of-distribution scientific domains without any fine-tuning.