Synthetic Data for Veterinary EHR De-identification: Benefits, Limits, and Safety Trade-offs Under Fixed Compute
By: David Brundage
Potential Business Impact:
Makes pet medical records private for sharing.
Veterinary electronic health records (vEHRs) contain privacy-sensitive identifiers that limit secondary use. While PetEVAL provides a benchmark for veterinary de-identification, the domain remains low-resource. This study evaluates whether large language model (LLM)-generated synthetic narratives improve de-identification safety under distinct training regimes, emphasizing (i) synthetic augmentation and (ii) fixed-budget substitution. We conducted a controlled simulation using a PetEVAL-derived corpus (3,750 holdout/1,249 train). We generated 10,382 synthetic notes using a privacy-preserving "template-only" regime where identifiers were removed prior to LLM prompting. Three transformer backbones (PetBERT, VetBERT, Bio_ClinicalBERT) were trained under varying mixtures. Evaluation prioritized document-level leakage rate (the fraction of documents with at least one missed identifier) as the primary safety outcome. Results show that under fixed-sample substitution, replacing real notes with synthetic ones monotonically increased leakage, indicating synthetic data cannot safely replace real supervision. Under compute-matched training, moderate synthetic mixing matched real-only performance, but high synthetic dominance degraded utility. Conversely, epoch-scaled augmentation improved performance: PetBERT span-overlap F1 increased from 0.831 to 0.850 +/- 0.014, and leakage decreased from 6.32% to 4.02% +/- 0.19%. However, these gains largely reflect increased training exposure rather than intrinsic synthetic data quality. Corpus diagnostics revealed systematic synthetic-real mismatches in note length and label distribution that align with persistent leakage. We conclude that synthetic augmentation is effective for expanding exposure but is complementary, not substitutive, for safety-critical veterinary de-identification.
Similar Papers
Data-Constrained Synthesis of Training Data for De-Identification
Computation and Language
Creates fake patient records for medical training.
A Case Study Exploring the Current Landscape of Synthetic Medical Record Generation with Commercial LLMs
Computation and Language
Makes fake health records work at any hospital.
Empirical Evaluation of Structured Synthetic Data Privacy Metrics: Novel experimental framework
Cryptography and Security
Makes fake data safe for sharing.